Update README.md (#11)
Browse files- Update README.md (e49eaa19fbcc45285f9da0fa0791686fe0376550)
Co-authored-by: zhang <timeseed@users.noreply.huggingface.co>
README.md
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@@ -20,8 +20,8 @@ cat MIMIC-IR.tar.gz.part* > MIMIC-IR.tar.gz
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tar xvzf MIMIC-IR.tar.gz
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```
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A simple demo to read the data (take CTRATE-IR for instance):
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```python
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import pandas as pd
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import numpy as np
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df = pd.read_csv(f'CTRATE-IR/anatomy/train_entity/{anatomy_condition}.csv')
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id_ls = df.iloc[:,0].tolist()
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findings_ls = df.iloc[:,1].tolist()
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simi_tab = np.load(f'CTRATE-IR/anatomy/train_ratescore/{anatomy_condition}.npy')
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# # MIMIC-IR
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tar xvzf MIMIC-IR.tar.gz
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```
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This example demonstrates how to read data from either the MIMIC-IR or CTRATE-IR datasets. You can switch between datasets by commenting/uncommenting the relevant sections.
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```python
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import pandas as pd
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import numpy as np
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df = pd.read_csv(f'CTRATE-IR/anatomy/train_entity/{anatomy_condition}.csv')
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id_ls = df.iloc[:,0].tolist()
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findings_ls = df.iloc[:,1].tolist()
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simi_tab = np.load(f'CTRATE-IR/anatomy/train_ratescore/{anatomy_condition}.npy')
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# # MIMIC-IR
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