chrom
stringclasses 22
values | pos
int64 99.5k
249M
| ref
stringclasses 4
values | alt
stringclasses 4
values | pip
float64 0
1
| trait
stringclasses 259
values | label
bool 2
classes | maf
float64 0
0.5
| ld_score
float64 1.53
628
| consequence
stringclasses 16
values | tss_dist
int64 0
1.58M
| match_group
stringlengths 5
37
|
---|---|---|---|---|---|---|---|---|---|---|---|
1
| 867,476 |
C
|
T
| 0.00156 | false | 0.079465 | 44.053 |
non_coding_transcript_exon_variant
| 56,446 |
non_coding_transcript_exon_variant_0
|
|
1
| 868,052 |
T
|
C
| 0.001791 | false | 0.077747 | 44.057 |
non_coding_transcript_exon_variant
| 55,870 |
non_coding_transcript_exon_variant_0
|
|
1
| 868,635 |
A
|
G
| 0.004349 | false | 0.075255 | 43.639 |
non_coding_transcript_exon_variant
| 55,287 |
non_coding_transcript_exon_variant_0
|
|
1
| 870,176 |
T
|
A
| 0 | false | 0.084371 | 37.271 |
non_coding_transcript_exon_variant
| 53,746 |
non_coding_transcript_exon_variant_0
|
|
1
| 1,052,930 |
A
|
G
| 0.001467 | false | 0.058385 | 46.907 |
non_coding_transcript_exon_variant
| 18,823 |
non_coding_transcript_exon_variant_1
|
|
1
| 1,359,031 |
C
|
T
| 0.003126 | false | 0.025499 | 89.382 |
PLS_flank
| 236 |
PLS_flank_0
|
|
1
| 1,704,180 |
T
|
C
| 0 | false | 0.40899 | 97.129 |
non_coding_transcript_exon_variant
| 11,384 |
non_coding_transcript_exon_variant_2
|
|
1
| 1,989,803 |
A
|
G
| 0 | false | 0.26523 | 45.391 |
dELS
| 1,125 |
dELS_3
|
|
1
| 2,293,397 |
G
|
A
| 0.999932 |
Height
| true | 0.37057 | 32.302 |
dELS
| 65,077 |
dELS_0
|
1
| 2,299,360 |
T
|
C
| 0.002934 | false | 0.3705 | 36.621 |
dELS
| 71,040 |
dELS_0
|
|
1
| 2,315,482 |
C
|
G
| 0 | false | 0.010493 | 14.476 |
non_coding_transcript_exon_variant
| 72,854 |
non_coding_transcript_exon_variant_6
|
|
1
| 2,392,128 |
T
|
C
| 0.008659 | false | 0.44831 | 48.579 |
PLS
| 237 |
PLS_4
|
|
1
| 2,409,065 |
C
|
T
| 0.003446 | false | 0.31807 | 36.147 |
dELS
| 3,474 |
dELS_7
|
|
1
| 2,416,601 |
T
|
C
| 0.001064 | false | 0.33711 | 36.202 |
dELS
| 2,803 |
dELS_7
|
|
1
| 2,869,701 |
G
|
T
| 0 | false | 0.001792 | 4.8399 |
DNase-H3K4me3
| 68,007 |
DNase-H3K4me3_0
|
|
1
| 2,878,207 |
G
|
C
| 0 | false | 0.001781 | 3.6632 |
DNase-H3K4me3
| 76,513 |
DNase-H3K4me3_0
|
|
1
| 3,079,632 |
C
|
G
| 0 | false | 0.49644 | 35.326 |
dELS
| 10,420 |
dELS_9
|
|
1
| 3,080,038 |
T
|
C
| 0.999895 |
MCH,MCV,Plt,RBC
| true | 0.23272 | 31.606 |
dELS
| 10,826 |
dELS_1
|
1
| 3,409,530 |
C
|
G
| 0.000537 | false | 0.23433 | 33.908 |
dELS
| 13,038 |
dELS_1
|
|
1
| 3,409,624 |
A
|
G
| 0 | false | 0.23428 | 33.922 |
dELS
| 13,132 |
dELS_1
|
|
1
| 3,431,704 |
G
|
C
| 0.000904 | false | 0.2206 | 18.586 |
dELS
| 22,960 |
dELS_6
|
|
1
| 3,530,431 |
C
|
T
| 0.005246 | false | 0.17759 | 35.05 |
pELS
| 991 |
pELS_4
|
|
1
| 3,543,648 |
G
|
T
| 0 | false | 0.11245 | 14.434 |
dELS_flank
| 12,199 |
dELS_flank_9
|
|
1
| 3,658,759 |
T
|
C
| 0 | false | 0.11229 | 17.07 |
dELS_flank
| 5,997 |
dELS_flank_9
|
|
1
| 3,690,596 |
G
|
A
| 0 | false | 0.066949 | 26.88 |
PLS
| 75 |
PLS_2
|
|
1
| 3,718,901 |
G
|
C
| 0 | false | 0.48348 | 35.17 |
dELS
| 20,842 |
dELS_9
|
|
1
| 3,774,964 |
A
|
G
| 0.999973 |
Hb,HbA1c,MCHC,RBC
| true | 0.23057 | 95.317 |
dELS
| 2,138 |
dELS_2
|
1
| 3,840,004 |
C
|
T
| 0 | false | 0.001743 | 6.7618 |
intron_variant
| 17,189 |
intron_variant_2
|
|
1
| 3,904,770 |
G
|
A
| 0 | false | 0.27154 | 47.968 |
dELS
| 4,497 |
dELS_3
|
|
1
| 3,959,637 |
A
|
G
| 0 | false | 0.37341 | 27.032 |
dELS
| 59,364 |
dELS_0
|
|
1
| 4,571,025 |
C
|
G
| 0 | false | 0.077068 | 84.633 |
pELS
| 83,583 |
pELS_3
|
|
1
| 4,694,484 |
C
|
T
| 0 | false | 0.34943 | 25.535 |
dELS_flank
| 39,751 |
dELS_flank_5
|
|
1
| 4,725,471 |
C
|
T
| 0 | false | 0.006133 | 7.7017 |
DNase-H3K4me3
| 70,738 |
DNase-H3K4me3_0
|
|
1
| 5,460,017 |
C
|
G
| 0 | false | 0.46288 | 37.6 |
dELS
| 530,909 |
dELS_12
|
|
1
| 5,486,106 |
T
|
C
| 0 | false | 0.35941 | 42.571 |
dELS
| 504,820 |
dELS_12
|
|
1
| 6,058,884 |
T
|
C
| 0 | false | 0.22973 | 92.037 |
dELS
| 6,868 |
dELS_2
|
|
1
| 6,100,503 |
A
|
G
| 0 | false | 0.21939 | 48.859 |
3_prime_UTR_variant
| 6,268 |
3_prime_UTR_variant_1
|
|
1
| 6,100,638 |
A
|
G
| 0 | false | 0.21997 | 48.887 |
3_prime_UTR_variant
| 6,133 |
3_prime_UTR_variant_1
|
|
1
| 6,100,816 |
A
|
G
| 0 | false | 0.21939 | 48.836 |
3_prime_UTR_variant
| 5,955 |
3_prime_UTR_variant_1
|
|
1
| 6,100,898 |
A
|
G
| 0 | false | 0.2197 | 48.831 |
3_prime_UTR_variant
| 5,873 |
3_prime_UTR_variant_1
|
|
1
| 6,104,620 |
C
|
A
| 0 | false | 0.063585 | 21.243 |
3_prime_UTR_variant
| 2,151 |
3_prime_UTR_variant_3
|
|
1
| 6,104,626 |
C
|
A
| 0 | false | 0.06176 | 22.678 |
3_prime_UTR_variant
| 2,145 |
3_prime_UTR_variant_3
|
|
1
| 6,236,178 |
T
|
G
| 0.001313 | false | 0.44911 | 43.011 |
PLS
| 213 |
PLS_4
|
|
1
| 6,247,570 |
G
|
A
| 0 | false | 0.043267 | 14.449 |
3_prime_UTR_variant
| 3,390 |
3_prime_UTR_variant_3
|
|
1
| 6,524,747 |
T
|
A
| 0 | false | 0.099925 | 65.263 |
3_prime_UTR_variant
| 4,672 |
3_prime_UTR_variant_2
|
|
1
| 6,812,085 |
C
|
T
| 0 | false | 0.008041 | 16.361 |
dELS_flank
| 26,553 |
dELS_flank_13
|
|
1
| 6,892,067 |
T
|
G
| 0 | false | 0.15268 | 121.5 |
dELS
| 106,535 |
dELS_17
|
|
1
| 7,468,786 |
C
|
T
| 0.000526 | false | 0.27177 | 36.888 |
dELS_flank
| 195,498 |
dELS_flank_12
|
|
1
| 7,469,958 |
T
|
G
| 0.000619 | false | 0.2947 | 39.842 |
dELS_flank
| 194,326 |
dELS_flank_12
|
|
1
| 7,472,230 |
C
|
T
| 0.001635 | false | 0.26527 | 37.012 |
dELS_flank
| 192,054 |
dELS_flank_12
|
|
1
| 7,506,006 |
G
|
A
| 0 | false | 0.27659 | 31.236 |
dELS
| 158,278 |
dELS_27
|
|
1
| 7,509,847 |
C
|
A
| 0 | false | 0.27276 | 30.199 |
dELS
| 154,437 |
dELS_27
|
|
1
| 7,509,946 |
C
|
A
| 0 | false | 0.27727 | 30.38 |
dELS
| 154,338 |
dELS_27
|
|
1
| 7,510,343 |
T
|
C
| 0 | false | 0.26775 | 27.871 |
dELS
| 153,941 |
dELS_27
|
|
1
| 7,905,951 |
C
|
T
| 0 | false | 0.001823 | 6.9218 |
intergenic_variant
| 29,148 |
intergenic_variant_3
|
|
1
| 8,941,902 |
T
|
A
| 0 | false | 0.14329 | 56.84 |
dELS
| 3,964 |
dELS_18
|
|
1
| 8,945,251 |
C
|
T
| 0.000528 | false | 0.01779 | 14.655 |
pELS
| 615 |
pELS_1
|
|
1
| 9,042,898 |
C
|
T
| 0 | false | 0.38311 | 86.804 |
dELS
| 16,474 |
dELS_10
|
|
1
| 9,062,449 |
G
|
A
| 0 | false | 0.35391 | 82.624 |
dELS_flank
| 7,154 |
dELS_flank_8
|
|
1
| 9,180,545 |
C
|
T
| 0.000542 | false | 0.060061 | 35.611 |
non_coding_transcript_exon_variant
| 51,442 |
non_coding_transcript_exon_variant_0
|
|
1
| 9,181,780 |
G
|
A
| 1 |
AST,Mono
| true | 0.074322 | 35.472 |
non_coding_transcript_exon_variant
| 52,677 |
non_coding_transcript_exon_variant_0
|
1
| 9,295,877 |
G
|
T
| 0.993319 |
DVT
| true | 0.26506 | 46.307 |
dELS
| 1,348 |
dELS_3
|
1
| 9,299,718 |
A
|
T
| 0.005775 | false | 0.2667 | 48.34 |
dELS
| 5,189 |
dELS_3
|
|
1
| 9,315,952 |
G
|
A
| 0.002646 | false | 0.45496 | 39.813 |
dELS
| 21,423 |
dELS_21
|
|
1
| 9,362,918 |
T
|
C
| 0.000513 | false | 0.23307 | 34.994 |
dELS
| 7,210 |
dELS_1
|
|
1
| 9,364,340 |
A
|
G
| 0 | false | 0.22994 | 35.367 |
dELS
| 8,632 |
dELS_1
|
|
1
| 9,433,231 |
C
|
T
| 0.00839 | false | 0.073274 | 45.728 |
intron_variant
| 77,523 |
intron_variant_10
|
|
1
| 9,439,187 |
G
|
A
| 0 | false | 0.17008 | 43.092 |
pELS
| 83,479 |
pELS_3
|
|
1
| 9,585,043 |
C
|
T
| 0 | false | 0.054223 | 19.606 |
3_prime_UTR_variant
| 3,867 |
3_prime_UTR_variant_3
|
|
1
| 9,692,590 |
C
|
T
| 0 | false | 0.41698 | 65.763 |
intron_variant
| 3,019 |
intron_variant_1
|
|
1
| 10,211,630 |
C
|
G
| 0.999686 |
Plt
| true | 0.11408 | 123.87 |
5_prime_UTR_variant
| 13 |
5_prime_UTR_variant_0
|
1
| 10,403,534 |
T
|
G
| 0.000977 | false | 0.026385 | 82.276 |
dELS_flank
| 3,901 |
dELS_flank_1
|
|
1
| 10,630,891 |
C
|
T
| 0.985187 |
eGFR
| true | 0.059295 | 52.934 |
dELS
| 14,184 |
dELS_4
|
1
| 10,692,299 |
T
|
C
| 0.99998 |
eGFRcys
| true | 0.2895 | 38.555 |
dELS_flank
| 47,222 |
dELS_flank_0
|
1
| 10,729,577 |
C
|
T
| 0.002886 | false | 0.36561 | 37.956 |
dELS
| 67,068 |
dELS_0
|
|
1
| 10,729,640 |
T
|
C
| 0.001415 | false | 0.36326 | 37.842 |
dELS
| 67,005 |
dELS_0
|
|
1
| 10,789,368 |
G
|
C
| 0.007112 | false | 0.22561 | 32.86 |
dELS
| 7,277 |
dELS_1
|
|
1
| 10,805,966 |
C
|
T
| 0 | false | 0.17489 | 17.134 |
intergenic_variant
| 9,315 |
intergenic_variant_8
|
|
1
| 10,805,973 |
A
|
T
| 0 | false | 0.17584 | 17.108 |
intergenic_variant
| 9,322 |
intergenic_variant_8
|
|
1
| 10,810,992 |
A
|
C
| 0 | false | 0.1796 | 17.659 |
intergenic_variant
| 14,341 |
intergenic_variant_8
|
|
1
| 10,994,429 |
C
|
A
| 0 | false | 0.1753 | 19.471 |
intergenic_variant
| 12,352 |
intergenic_variant_8
|
|
1
| 11,651,348 |
G
|
A
| 0 | false | 0.11644 | 12.609 |
dELS_flank
| 3,026 |
dELS_flank_9
|
|
1
| 11,664,035 |
G
|
C
| 0.000678 | false | 0.47269 | 39.848 |
PLS
| 164 |
PLS_4
|
|
1
| 11,673,018 |
T
|
C
| 0 | false | 0.2303 | 38.945 |
non_coding_transcript_exon_variant
| 4,321 |
non_coding_transcript_exon_variant_4
|
|
1
| 11,848,089 |
C
|
G
| 0.999999 |
MAP,SBP
| true | 0.010641 | 47.372 |
5_prime_UTR_variant
| 255 |
5_prime_UTR_variant_1
|
1
| 11,876,856 |
C
|
T
| 0.000721 | false | 0.41386 | 131.81 |
pELS
| 17,910 |
pELS_6
|
|
1
| 11,877,306 |
C
|
T
| 0.0005 | false | 0.40983 | 134.9 |
pELS
| 18,360 |
pELS_6
|
|
1
| 12,039,288 |
A
|
G
| 1 |
Eosino
| true | 0.099751 | 53.631 |
dELS
| 19,789 |
dELS_5
|
1
| 12,040,885 |
A
|
T
| 0 | false | 0.088348 | 67.062 |
dELS
| 21,386 |
dELS_14
|
|
1
| 12,044,283 |
G
|
C
| 0 | false | 0.088431 | 66.75 |
dELS
| 19,019 |
dELS_14
|
|
1
| 12,150,629 |
A
|
G
| 0.000784 | false | 0.48917 | 37.025 |
dELS
| 16,361 |
dELS_9
|
|
1
| 12,158,564 |
G
|
A
| 0 | false | 0.48127 | 34.973 |
dELS
| 8,426 |
dELS_9
|
|
1
| 12,186,118 |
C
|
T
| 0.999987 |
Eosino
| true | 0.2179 | 17.311 |
dELS
| 19,114 |
dELS_6
|
1
| 12,218,875 |
A
|
G
| 0 | false | 0.22412 | 16.868 |
dELS
| 11,154 |
dELS_6
|
|
1
| 12,601,409 |
G
|
C
| 0.914738 |
RBC
| true | 0.32957 | 37.798 |
dELS
| 5,100 |
dELS_7
|
1
| 12,615,695 |
G
|
A
| 0 | false | 0.32085 | 36.525 |
dELS
| 1,099 |
dELS_7
|
|
1
| 12,617,607 |
G
|
A
| 0 | false | 0.009083 | 6.3441 |
5_prime_UTR_variant
| 602 |
5_prime_UTR_variant_3
|
|
1
| 12,618,735 |
C
|
T
| 0 | false | 0.22592 | 21.571 |
non_coding_transcript_exon_variant
| 524 |
non_coding_transcript_exon_variant_4
|
|
1
| 12,758,908 |
A
|
G
| 0 | false | 0.060271 | 51.889 |
dELS
| 12,482 |
dELS_4
|
|
1
| 13,832,260 |
T
|
G
| 0 | false | 0.37317 | 36.572 |
dELS
| 60,531 |
dELS_0
|
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