diff --git a/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..77d4daa98e8ae2759527da6fd462148b1304ebca
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/3_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,19 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9260261941dc22c7ce3318e6c6c95f5c8a084fc6
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d1bb5a811897cde46206f5b44132855714d6fb71
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/5_prime_UTR_variant/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..12d0cedb800e3aaecbb769ec4b984b87be576954
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0d7f85d4accd319007274706a2be75e5c399ea24
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e494068f1fc50f99f55bc579a03d49214f9ce836
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..03eec45b1afd0663925634652a2b0db6daa8306a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e547d558042294e56167fe73fcef91b25eb4cd8f
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a96e3600a5a947b952cfb6b14c62840406687c1a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..de3357bb8b34ef9b3d0486052bf1a32c5c23a88e
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9e907ed2eecfd90a812d015bf395fd82dbf94922
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d2022be4001376ad6de88c5c904173d81a1a0ff2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8d9fa133e0f0708d8d6dee2b1b03010dd81bdac4
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1cc2542cae4af05ee131362890c36468682e6d48
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..df3f289038d7d69b774df5e40d985d637b8def7d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1f01e6801f4f2659756b23a7cb77ffc4a7003b4d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Enformer_L2_L2.plus.all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c38e89ca4503fc6240512e98a4e4d951b9f6f165
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..98b862667a5f814e0e2feffa406787e4fdf8b82c
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..616ac52779fe696e79d66a042889260f9db304d2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e5a62f008e6d399c4ac63c712410d6c824aae0f8
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8e7b954d3c3ba0737616a3f1c4c1a404bb225e8e
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..aa7d4985ac26057341e1728c6850d619293abbc9
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..426c3c9b8814ead00e431735236d4733d07f4cbf
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..73fd27b24868616f49db56aa610cc2eb1c55d4d4
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..69c03c5c4fa97ca661ac03a878c4260aa2e0c0d9
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..48cd7e7a6bc6e75ca4a92909414ea2e68f7a216e
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..256b264dafe0cdc017005e94e3accd9987221749
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..32d90d51a7c01103e9494442d00da4bf3bc73efb
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d632426e960ef8f91c8b5bf1d0b6b50d5f693bbc
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3546309edea131e2cc156b429357931074a7a8cc
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3f2d3e1eaa1f22b4642ddabeb624d94ee1425b96
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ab4dab7649d358dcf555779ef4d6432188fd9a79
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e2c01e9938b7d6d9eaae436701ffb3df8be92460
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..106584c832b3d0d82ecb25b628de8bae0accca13
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..54137ce7ccee6472d8f6149d6e8db2982aa5e5fe
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c4f954608e2d7d3540d562ef63834c0577962c20
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..30edce7ae08911fec321eef126e15d78c9ad483a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1a9240270a6173cb4971fdc58a890b9d829b363a
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.cosine_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..8a52d179696a50562dd1f6eac5bb03984da47ede
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..939cd66e27fcdd7698d8d71d963964e5a2cc867f
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9dc3dc46942968da03eba4aa1f6ae1453969c07d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b80730e4d5e4ed67b5ebd447b1213594bee6fb7c
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv b/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..22d59dd0566ab488c425fe5351038208c3bc9503
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a06dd675956e0e7b3297c9d06a381305288cd41d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_Embeddings.plus.euclidean_distance.csv b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..91da8a15171118d0b6a38b6d2ec5827bed32bf09
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_Embeddings.plus.euclidean_distance.csv
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+chrom,n,Model,AUPRC
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3adba6a4b84d45a70fde5554dd347cde71b54f89
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/Borzoi_L2_L2.plus.all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4bdbe2130f8b802cc40e44d0215be911b0f57c6d
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/CADD.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a5c5e012a068bacde6708526aff480f2b890f6a1
--- /dev/null
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2cc84f3961265886683a59c0521fd2e3ee4b2524
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pip_0.99/GPN-MSA_absLLR.plus.score.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4232d5a2d6f5a3a5073803079a4d6d275e026a92
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/CADD.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..867bc96d70757e1a6f3e8f16c25548f5624241c2
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_no/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/GPN-MSA_absLLR.plus.score.csv b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fae68f90cf71dcfc743eccc18e54df4ec8c200ff
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/pleiotropy_yes/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,23 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..7317c175d2acbb5357c44570edc3f9317bb398d9
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi_L2_L2.plus.all.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..964342e0f05f3a52ec4e5c163dc8f6311e517f62
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,22 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..7425793ee606960ae081de1a396c6a3574e8b4ac
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD+GPN-MSA+Borzoi.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6c72e8fbfc8f49834b459afb48ab572da9001d25
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,22 @@
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.plus.RawScore.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..62025bea19a90792a4454bb72ba38c670556e9f3
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/CADD.plus.RawScore.csv
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diff --git a/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..24a506ce83827606a468553e762f1f93ac4f4bc3
--- /dev/null
+++ b/complex_traits_matched_9/AUPRC_by_chrom/yes_eqtl_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
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