diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..16f8a2211c589c24550f5614f2cbdfe884ef62cc
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..17d6bea1003ead024ae876bacbf2cd2b94f91dcd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+Borzoi.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f4329784eed9357cc5f5db438fccaefea75f023f
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD+GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..330496144e90c4ec4b93fd915dd94ec017f0303a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/CADD.plus.RawScore.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..79acfea1ce8e85fbe484ba62e6196abe9c888e56
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..bc30acd43d3f505d8e4e253025a33aaad903c29a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..380cedc2c787852ed5bb52e1e7160a00135a5456
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..eba1c34f6e09bf3e30b33dbc6fba9e0b7ce5fbee
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b96e62872df9632c9b6017cf8bc917a2763bcc27
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_LLR.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1ca7b27fe08061170c33b63174bf87cfdfa0e6bb
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Caduceus_absLLR.plus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f9bfcc2e3bd6f161ce65edf64211943948d75b59
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Enformer.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..23e90734eb051b0f5a424248f38c4b46cfaec9c6
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..06e1ffb22e55f7626c675e1a234acb9eceecceed
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..9c479e2098ed9529c38877af4e45cd274f6fe1bb
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.cosine_distance.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..53eb2483d0c1da1424cde6f32804798d8a3c2185
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_InnerProduct.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_InnerProduct.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..982691143fc49fef93200ec71b4ebe079afa6108
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_InnerProduct.minus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..d1ea1801801fd221d355b1569e1f2c063c8d99ce
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_LLR.minus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..686566da005aee170c27c14eb0e0eba402f2e537
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN-MSA_absLLR.plus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..76e2966c1ec3896da855daa81c716cc1fd75fbb9
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..776b552ff2c68670c9940e0617612f6f123d94dd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a2994e5c7edebf503d596f23d882875941e5c8b6
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_Embeddings.plus.euclidean_distance.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_InnerProduct.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_InnerProduct.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6192c5d817803442a8188e6024db123b84b590cc
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_InnerProduct.minus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a5bee361c63fd80605ed7a3444a2c0b721a03178
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_LLR.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3b1e2d004462ab839b07c71b2c2efff98350ef5a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/GPN_final_absLLR.plus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f1d736ba17ad138af9f9a81d02617c87ec92f38d
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..994fff9937806e9c13dc8134d68b7856c828ccfe
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..af46d7f256e105da7b614cb1ac6cda27168c4623
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e3ca51b0bf6d0ebd363bb547cc22eb3427bc279e
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_InnerProduct.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_InnerProduct.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0196f4aa035eb90dccb4e90d0df8034818ad02f2
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_InnerProduct.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..84cd751a85d5ab20abffdc3b82360614ba0c791c
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_LLR.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..09e0b471337d400635354cb9aa4ea369aa5cb8f2
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/HyenaDNA_absLLR.plus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2b50444180143c5ab07791ba3f760acef4c968b2
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3bb6452ab15cf0297ad5a6676320fc82c67095a2
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4eec3921e4cb85d58ed21a822aeed04508a42cae
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_InnerProduct.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_InnerProduct.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..57af97e2d5f97a4a543968b4c9b8f8765162aecc
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_InnerProduct.minus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4d991c8b85c13393409e05f898ec34a957771381
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_LLR.minus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..31b49aed8ae83784400a83cc57c64a5e84ed07bd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/NucleotideTransformer_absLLR.plus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..beab10365ac1e3901a1143a3d5a2f04d2f5aca54
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.LogisticRegression.chrom.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..90cba3ac83d3da67b56ea93a4f16f9f98f91b12d
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/all/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..6f93a35cf5f49d99a2a9b27cea207f8f3c9f95bc
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c602bc1de327384abede8f24305ae3a08511561a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Borzoi_L2_L2.plus.all.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..225b91ac39a06b42214124c4152b65f4de8c62e4
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f95535a4fcbe77f80abd5eac30114ee8ea8c8320
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/CADD.plus.RawScore.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..726e175bb7fe7af73ee2fa807da02de582ae05c7
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..24968ad5a092aedae27e6af1198bc88b82f2fc10
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..b48537c6c06366ba6e5857de85935a784729a630
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Caduceus_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a19b7d5c34b910f85b20ecba2c265f83734f5dac
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer_L2_L2.plus.all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..fb019b0695b212b6a2bfaaf5ed0d4686da31eee5
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Enformer_L2_L2.plus.all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2eccb931465e1f9faad009330483b6dd6b1ecead
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e8be8b47800048f5d8be31f15485f75a553660de
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_LLR.minus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4e9296f80e87eea5f5d1d7e685547fb4de16ecbd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN-MSA_absLLR.plus.score.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..eac6288e089d9dd6187fa94dc04973b87eeffdb1
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..4c0737e65e7f92fe2c877891f749d2381ea30656
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..c34362b341dd899b1874f821bced9fb4cec44e56
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_LLR.minus.score.csv
@@ -0,0 +1,20 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..f4361050026ec08ca1067cc040fad6fbc102581a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/GPN_final_absLLR.plus.score.csv
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..39f4ed5155308e70e23e0a5ffb84327ff21365cd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..55b5f82d357b45e87435fa19212708702b63b5fd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/HyenaDNA_Embeddings.minus.inner_product.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..16cf99400919518f13606abae7e4f0335ec096e0
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3268415e4afe7f05ad4cd9362d19fd24ca939078
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.minus.inner_product.csv
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+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..1e6ddc7f4fc8b7f8bdb16eb8b9cebf7ed78af9fd
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/NucleotideTransformer_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..5de3c41eb2c3b86bf203a8812eb8f27a7e8da676
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..73e8952f49999a72f7890c8defc87e39762f38c1
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/no_cadd_overlap/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,20 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..3e0e83f124291537aa85e124aea21e1cb1d92b5f
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/non_coding_transcript_exon_variant/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,9 @@
+chrom,n,Model,AUPRC
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..14768bf5bdb7a7f08d088a7f9468c428c6e904fe
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
@@ -0,0 +1,11 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_LLR.minus.score.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_LLR.minus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..95b621d6773deff076161797460a354c59498052
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_distal/GPN_final_LLR.minus.score.csv
@@ -0,0 +1,11 @@
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diff --git a/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ae2c51bb3f2f815bb921ca8676b0165a1cf3f4b2
--- /dev/null
+++ b/mendelian_traits_matched_9/AUPRC_by_chrom/nonexonic_AND_proximal/GPN_final.LogisticRegression.chrom.subset_from_all.csv
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diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..2ea104eb2347a32dd1c65db7956ad5ef8a190f6a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Borzoi_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Borzoi_L2_L2.plus.all,AUROC,0.782462527443108,0.023659140255883095
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..a9e17fbf8d507d3b469ae843a5a4644f927e1844
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Caduceus_Embeddings.plus.cosine_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Caduceus_Embeddings.plus.cosine_distance,AUROC,0.5343099688465502,0.025121726713602997
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv
new file mode 100644
index 0000000000000000000000000000000000000000..ef768e87beef17f66689c6f7aabfb162d2c6a59a
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Enformer_L2_L2.plus.all.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Enformer_L2_L2.plus.all,AUROC,0.7674605959961006,0.026599978683232127
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..341e3d13a8e07f45f7e118040a78a94336a36591
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA.LogisticRegression.chrom,AUROC,0.908095479709192,0.01895009707106832
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..afc139f17a9f62257262fb03f5b121a8cc1021fb
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN-MSA_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN-MSA_Embeddings.plus.euclidean_distance,AUROC,0.6714052239860324,0.03094210019712664
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv
new file mode 100644
index 0000000000000000000000000000000000000000..02374b629a09a0e687d80554974502b025f4e855
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final.LogisticRegression.chrom.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final.LogisticRegression.chrom,AUROC,0.757363188890585,0.0389518460494843
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv
new file mode 100644
index 0000000000000000000000000000000000000000..0dc24cdc4bed98de8221f729f5f6102a55097696
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/GPN_final_absLLR.plus.score.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+GPN_final_absLLR.plus.score,AUROC,0.6431993825231542,0.04921910421007076
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
new file mode 100644
index 0000000000000000000000000000000000000000..e8539c5a8cd11d63f8ee872efac7b7d7f9fecc1c
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/HyenaDNA_Embeddings.plus.euclidean_distance.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+HyenaDNA_Embeddings.plus.euclidean_distance,AUROC,0.47345090768155623,0.04210173465597658
diff --git a/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv
new file mode 100644
index 0000000000000000000000000000000000000000..187cd8eb313421544d837eea041f304de21eb29e
--- /dev/null
+++ b/mendelian_traits_matched_9/AUROC_by_chrom_weighted_average/all/Sei.plus.seqclass_max_absdiff.csv
@@ -0,0 +1,2 @@
+model,metric,score,se
+Sei.plus.seqclass_max_absdiff,AUROC,0.7033725693098333,0.035258525349088264