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"zip_data": {"basename": "shard.00021.mds.zstd", "bytes": 19295955, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00022.mds", "bytes": 67101675, "hashes": {}}, "samples": 1164, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00022.mds.zstd", "bytes": 19239632, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00023.mds", "bytes": 67086471, "hashes": {}}, "samples": 1188, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00023.mds.zstd", "bytes": 19344414, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00024.mds", "bytes": 67108205, "hashes": {}}, "samples": 1145, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00024.mds.zstd", "bytes": 19151851, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 64069800, "hashes": {}}, "samples": 1119, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 18342170, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/0-0/tokenize_output.log b/arxiv/0-0/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..e39aa3e412197398ec19186e1f5decc1d6242b0d --- /dev/null +++ b/arxiv/0-0/tokenize_output.log @@ -0,0 +1,72 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/0-0... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30228 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard + raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 212, in _process_file + zip_data = compress(self.compression, raw_data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 240, in compress + return obj.compress(data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 153, in compress + return zstd.compress(data, self.level) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function + p.join() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join + res = self._popen.wait(timeout) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait + return self.poll(os.WNOHANG if timeout == 0.0 else 0) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll + pid, sts = os.waitpid(self.pid, flag) +KeyboardInterrupt: diff --git a/arxiv/0-6/index.json b/arxiv/0-6/index.json new file mode 100644 index 0000000000000000000000000000000000000000..d21b3b9827fe5fbbdf1c106f93fe44d907c35e77 --- /dev/null +++ b/arxiv/0-6/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 66884582, "hashes": {}}, "samples": 1171, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00000.mds.zstd", "bytes": 19131832, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00001.mds", "bytes": 67078786, "hashes": {}}, "samples": 1153, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00001.mds.zstd", "bytes": 19097172, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00002.mds", "bytes": 67072367, "hashes": {}}, "samples": 1137, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00002.mds.zstd", "bytes": 18836077, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00003.mds", "bytes": 67055157, "hashes": {}}, "samples": 1156, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00003.mds.zstd", "bytes": 19150122, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00004.mds", "bytes": 67103301, "hashes": {}}, "samples": 1143, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00004.mds.zstd", "bytes": 19052257, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00005.mds", "bytes": 67102494, "hashes": {}}, "samples": 1167, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00005.mds.zstd", "bytes": 19271204, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00006.mds", "bytes": 66982177, "hashes": {}}, "samples": 1087, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00006.mds.zstd", "bytes": 18953266, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00007.mds", "bytes": 67052831, "hashes": {}}, "samples": 1169, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00007.mds.zstd", "bytes": 19225357, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00008.mds", "bytes": 67086153, "hashes": {}}, "samples": 1179, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00008.mds.zstd", "bytes": 19088293, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00009.mds", "bytes": 67048649, "hashes": {}}, "samples": 1193, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00009.mds.zstd", "bytes": 19422585, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00010.mds", "bytes": 67095529, "hashes": {}}, "samples": 1184, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00010.mds.zstd", "bytes": 19338176, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00011.mds", "bytes": 67046191, "hashes": {}}, "samples": 1129, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00011.mds.zstd", "bytes": 18898985, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00012.mds", "bytes": 67074611, "hashes": {}}, "samples": 1133, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00012.mds.zstd", "bytes": 18960078, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00013.mds", "bytes": 67026505, "hashes": {}}, "samples": 1134, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00013.mds.zstd", "bytes": 18971449, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00014.mds", "bytes": 67055749, "hashes": {}}, "samples": 1202, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00014.mds.zstd", "bytes": 19181789, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00015.mds", "bytes": 67087404, "hashes": {}}, "samples": 1123, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00015.mds.zstd", "bytes": 19138951, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00016.mds", "bytes": 67052886, "hashes": {}}, "samples": 1156, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00016.mds.zstd", "bytes": 19365917, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00017.mds", "bytes": 66985707, "hashes": {}}, "samples": 1175, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00017.mds.zstd", "bytes": 19001691, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00018.mds", "bytes": 67092042, "hashes": {}}, "samples": 1197, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00018.mds.zstd", "bytes": 19056959, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00019.mds", "bytes": 67072222, "hashes": {}}, "samples": 1143, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00019.mds.zstd", "bytes": 19147986, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00020.mds", "bytes": 67095621, "hashes": {}}, "samples": 1217, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00020.mds.zstd", "bytes": 19232948, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00021.mds", "bytes": 67084434, "hashes": {}}, "samples": 1154, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00021.mds.zstd", "bytes": 19346774, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00022.mds", "bytes": 67090784, "hashes": {}}, "samples": 1182, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00022.mds.zstd", "bytes": 19075386, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00023.mds", "bytes": 67087451, "hashes": {}}, "samples": 1179, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00023.mds.zstd", "bytes": 19125015, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00024.mds", "bytes": 67089943, "hashes": {}}, "samples": 1187, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00024.mds.zstd", "bytes": 19108821, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 67108109, "hashes": {}}, "samples": 1170, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 18669090, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 3227054, "hashes": {}}, "samples": 52, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 942264, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/0-6/tokenize_output.log b/arxiv/0-6/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..b9fd19d4c71eb2d8eea729021640f6cb076cc292 --- /dev/null +++ b/arxiv/0-6/tokenize_output.log @@ -0,0 +1,58 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/0-6... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30272 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 428, in flush_shard + raw_data = self.encode_joint_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/mds/writer.py", line 143, in encode_joint_shard + sample_data = b''.join(self.new_samples) +KeyboardInterrupt + Processing samples: 40%|███▉ | 12000/30272 [18:05<27:33, 11.05it/s] diff --git a/arxiv/1-5/index.json b/arxiv/1-5/index.json new file mode 100644 index 0000000000000000000000000000000000000000..a6fa02350afc2c37b062f49da40f53531de0a0b8 --- /dev/null +++ b/arxiv/1-5/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 67087651, "hashes": {}}, "samples": 1186, "size_limit": 67108864, 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"version": 2, "zip_data": {"basename": "shard.00024.mds.zstd", "bytes": 19329664, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 67063599, "hashes": {}}, "samples": 1208, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 19221634, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 9684996, "hashes": {}}, "samples": 187, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 2860962, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/1-5/tokenize_output.log b/arxiv/1-5/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..9681290849c9b91688ea26eaeb5c51ae7de1a89b --- /dev/null +++ b/arxiv/1-5/tokenize_output.log @@ -0,0 +1,16 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/1-5... +Traceback (most recent call last): + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 108, in + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 46, in sample_dataset_from_config + dataset = StreamingDataset(local=args.dataset, shuffle=False, split=None, batch_size=1, keep_zip=False) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/dataset.py", line 526, in __init__ + self._shm_prefix_int, self._locals_shm = get_shm_prefix(streams_local, streams_remote, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/shared/prefix.py", line 192, in get_shm_prefix + shm = SharedMemory(name, True, len(data)) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/shared/memory.py", line 41, in __init__ + shm = BuiltinSharedMemory(name, create, size) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/shared_memory.py", line 104, in __init__ + self._fd = _posixshmem.shm_open( +FileExistsError: [Errno 17] File exists: '/000043_locals' diff --git a/arxiv/2-9/index.json b/arxiv/2-9/index.json new file mode 100644 index 0000000000000000000000000000000000000000..d9731835578b9970aab8c5be0a25bd48fb037c8b --- /dev/null +++ b/arxiv/2-9/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 67087408, "hashes": {}}, "samples": 1103, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00000.mds.zstd", "bytes": 18847157, "hashes": {}}}, 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{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 67053504, "hashes": {}}, "samples": 1180, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 19388757, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 67108452, "hashes": {}}, "samples": 1156, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 19230297, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00027.mds", "bytes": 21993951, "hashes": {}}, "samples": 414, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00027.mds.zstd", "bytes": 6415159, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/2-9/tokenize_output.log b/arxiv/2-9/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..0057a6ce5ad387b2fb6dc244a97e4c4c130444b5 --- /dev/null +++ b/arxiv/2-9/tokenize_output.log @@ -0,0 +1,58 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/2-9... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/31296 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 428, in flush_shard + raw_data = self.encode_joint_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/mds/writer.py", line 143, in encode_joint_shard + sample_data = b''.join(self.new_samples) +KeyboardInterrupt + Processing samples: 29%|██▉ | 9000/31296 [18:04<44:47, 8.30it/s] diff --git a/arxiv/4-1-tokenized/index.json b/arxiv/4-1-tokenized/index.json new file mode 100644 index 0000000000000000000000000000000000000000..6e3cdfae9ccd1c6c54d624a0c475bf8969f42592 --- /dev/null +++ b/arxiv/4-1-tokenized/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 67098806, "hashes": {}}, "samples": 1839, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00000.mds.zstd", "bytes": 29487585, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00001.mds", "bytes": 67097856, "hashes": {}}, "samples": 1890, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00001.mds.zstd", "bytes": 29697451, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00002.mds", "bytes": 67089622, "hashes": {}}, "samples": 1870, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00002.mds.zstd", "bytes": 29776049, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00003.mds", "bytes": 67054462, "hashes": {}}, "samples": 1846, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00003.mds.zstd", "bytes": 29580653, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00004.mds", "bytes": 67094334, "hashes": {}}, "samples": 1793, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00004.mds.zstd", "bytes": 29064964, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00005.mds", "bytes": 67102093, "hashes": {}}, "samples": 1861, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00005.mds.zstd", "bytes": 29491347, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00006.mds", "bytes": 67091953, "hashes": {}}, "samples": 1824, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00006.mds.zstd", "bytes": 29290226, "hashes": {}}}, {"column_encodings": ["str", "str", "ndarray:uint16", "int"], "column_names": ["domain", "id", "input_ids", "len"], "column_sizes": [null, null, null, 8], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00007.mds", "bytes": 2670931, "hashes": {}}, "samples": 77, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00007.mds.zstd", "bytes": 1141754, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/4-3/index.json b/arxiv/4-3/index.json new file mode 100644 index 0000000000000000000000000000000000000000..eb81a2e2b56e12da3e4d1ebc2de883f8bf0cfb94 --- /dev/null +++ b/arxiv/4-3/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 67084423, "hashes": {}}, "samples": 1174, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00000.mds.zstd", "bytes": 19158916, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00001.mds", "bytes": 67010058, "hashes": {}}, "samples": 1213, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00001.mds.zstd", "bytes": 19272832, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00002.mds", "bytes": 67018241, "hashes": {}}, "samples": 1187, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00002.mds.zstd", "bytes": 19338918, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00003.mds", "bytes": 67081237, "hashes": {}}, "samples": 1158, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00003.mds.zstd", "bytes": 19157639, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00004.mds", "bytes": 67094174, "hashes": {}}, "samples": 1156, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00004.mds.zstd", "bytes": 19127392, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00005.mds", "bytes": 67083243, "hashes": {}}, "samples": 1142, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00005.mds.zstd", "bytes": 18945453, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00006.mds", "bytes": 67004293, "hashes": {}}, "samples": 1149, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00006.mds.zstd", "bytes": 18809117, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00007.mds", "bytes": 67059324, "hashes": {}}, "samples": 1163, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00007.mds.zstd", "bytes": 18959740, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00008.mds", "bytes": 67104281, "hashes": {}}, "samples": 1194, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00008.mds.zstd", "bytes": 19213875, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00009.mds", "bytes": 67101622, "hashes": {}}, "samples": 1173, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00009.mds.zstd", "bytes": 19133012, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00010.mds", "bytes": 67104897, "hashes": {}}, "samples": 1133, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00010.mds.zstd", "bytes": 18604105, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00011.mds", "bytes": 67097962, "hashes": {}}, "samples": 1158, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00011.mds.zstd", "bytes": 19224851, "hashes": {}}}, {"column_encodings": ["str", "str"], 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"zip_data": {"basename": "shard.00014.mds.zstd", "bytes": 18712074, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00015.mds", "bytes": 67057168, "hashes": {}}, "samples": 1175, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00015.mds.zstd", "bytes": 19136600, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00016.mds", "bytes": 67077532, "hashes": {}}, "samples": 1182, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00016.mds.zstd", "bytes": 19099609, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00017.mds", "bytes": 67107483, "hashes": {}}, "samples": 1134, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00017.mds.zstd", "bytes": 18981886, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00018.mds", "bytes": 66875825, "hashes": {}}, "samples": 1159, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00018.mds.zstd", "bytes": 19063062, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00019.mds", "bytes": 67075473, "hashes": {}}, "samples": 1179, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00019.mds.zstd", "bytes": 19166322, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00020.mds", "bytes": 67083383, "hashes": {}}, "samples": 1141, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00020.mds.zstd", "bytes": 19070664, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00021.mds", "bytes": 66915495, "hashes": {}}, "samples": 1128, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00021.mds.zstd", "bytes": 18983038, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00022.mds", "bytes": 67026061, "hashes": {}}, "samples": 1175, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00022.mds.zstd", "bytes": 19145193, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00023.mds", "bytes": 67088668, "hashes": {}}, "samples": 1173, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00023.mds.zstd", "bytes": 19010320, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00024.mds", "bytes": 67049453, "hashes": {}}, "samples": 1177, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00024.mds.zstd", "bytes": 18917167, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 65265038, "hashes": {}}, "samples": 1162, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 18772001, "hashes": {}}}], "version": 2} \ No newline at end of file diff --git a/arxiv/4-3/tokenize_output.log b/arxiv/4-3/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..400d91629845437e01a25f66e6ae00ca0c10ec79 --- /dev/null +++ b/arxiv/4-3/tokenize_output.log @@ -0,0 +1,66 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/4-3... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30240 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 300, in finish + self._write_index() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 289, in _write_index + sleep(1) +KeyboardInterrupt +Exception ignored in atexit callback: +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function + p.join() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join + res = self._popen.wait(timeout) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait + return self.poll(os.WNOHANG if timeout == 0.0 else 0) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll + pid, sts = os.waitpid(self.pid, flag) +KeyboardInterrupt: diff --git a/arxiv/4-9/tokenize_output.log b/arxiv/4-9/tokenize_output.log new file mode 100644 index 0000000000000000000000000000000000000000..5b6c98e03665fc1209946d9331584d5cc17129ce --- /dev/null +++ b/arxiv/4-9/tokenize_output.log @@ -0,0 +1,64 @@ +Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes). +Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained. +Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/4-9... +Using tokenizer model bclavie/olmo_bert_template... +Using 1 processes for tokenization, with 1000 items per process. + Processing samples: 0%| | 0/30630 [00:00 + sample_dataset_from_config(args) + File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config + with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer: + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__ + self.finish() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish + self.flush_shard() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard + raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename, + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 212, in _process_file + zip_data = compress(self.compression, raw_data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 240, in compress + return obj.compress(data) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 153, in compress + return zstd.compress(data, self.level) +KeyboardInterrupt +Exception ignored in atexit callback: > +Traceback (most recent call last): + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 667, in _exitfunc + f() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 591, in __call__ + return info.func(*info.args, **(info.kwargs or {})) + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1180, in _close_pool_connections + conn.close() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connection.py", line 275, in close + super().close() + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/http/client.py", line 961, in close + sock.close() # close it manually... there may be other refs + File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/socket.py", line 498, in close + def close(self): +KeyboardInterrupt: + Processing samples: 42%|████▏ | 13000/30630 [18:05<24:31, 11.98it/s] diff --git a/arxiv/5-4/index.json b/arxiv/5-4/index.json new file mode 100644 index 0000000000000000000000000000000000000000..6833cb9b833ded3511c394f4cd656b8c9a544365 --- /dev/null +++ b/arxiv/5-4/index.json @@ -0,0 +1 @@ +{"shards": [{"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00000.mds", "bytes": 66983324, "hashes": {}}, "samples": 1166, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00000.mds.zstd", "bytes": 19019899, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00001.mds", "bytes": 67061277, "hashes": {}}, "samples": 1135, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00001.mds.zstd", "bytes": 19060089, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00002.mds", "bytes": 67095498, "hashes": {}}, "samples": 1162, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00002.mds.zstd", "bytes": 19125237, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00003.mds", "bytes": 67030621, "hashes": {}}, "samples": 1181, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00003.mds.zstd", "bytes": 19149076, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00004.mds", "bytes": 67104132, "hashes": {}}, "samples": 1157, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00004.mds.zstd", "bytes": 19097560, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, 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