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arxiv/0-3/index.json

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arxiv/0-3/tokenize_output.log

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+Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes).
+Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained.
+Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/0-3...
+Using tokenizer model bclavie/olmo_bert_template...
+Using 1 processes for tokenization, with 1000 items per process.
+
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 81, in sample_dataset_from_config
+    results = pool.map(process_func, chunks)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 367, in map
+    return self._map_async(func, iterable, mapstar, chunksize).get()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 768, in get
+    self.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 765, in wait
+    self._event.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 607, in wait
+    signaled = self._cond.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 320, in wait
+    waiter.acquire()
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 64, in sample_dataset_from_config
+    with mp.Pool(num_processes) as pool:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 739, in __exit__
+    self.terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 657, in terminate
+    self._terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 224, in __call__
+    res = self._callback(*self._args, **self._kwargs)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 732, in _terminate_pool
+    p.join()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join
+    res = self._popen.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait
+    return self.poll(os.WNOHANG if timeout == 0.0 else 0)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll
+    pid, sts = os.waitpid(self.pid, flag)
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 108, in <module>
+    sample_dataset_from_config(args)
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config
+    with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__
+    self.finish()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish
+    self.flush_shard()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard
+    raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename,
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 212, in _process_file
+    zip_data = compress(self.compression, raw_data)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 240, in compress
+    return obj.compress(data)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/compression.py", line 153, in compress
+    return zstd.compress(data, self.level)
+KeyboardInterrupt
+Exception ignored in atexit callback: <function dump_compile_times at 0x7fd194669480>
+Traceback (most recent call last):
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 320, in dump_compile_times
+    log.info(compile_times(repr="str", aggregate=True))
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 307, in compile_times
+    out += tabulate(rows, headers=("Function", "Runtimes (s)"))
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/torch/_dynamo/utils.py", line 121, in tabulate
+    import tabulate
+  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
+  File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
+  File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
+  File "<frozen importlib._bootstrap_external>", line 879, in exec_module
+  File "<frozen importlib._bootstrap_external>", line 1012, in get_code
+  File "<frozen importlib._bootstrap_external>", line 672, in _compile_bytecode
+KeyboardInterrupt: 
+Exception ignored in atexit callback: <bound method finalize._exitfunc of <class 'weakref.finalize'>>
+Traceback (most recent call last):
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 667, in _exitfunc
+    f()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/weakref.py", line 591, in __call__
+    return info.func(*info.args, **(info.kwargs or {}))
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connectionpool.py", line 1180, in _close_pool_connections
+    conn.close()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/urllib3/connection.py", line 275, in close
+    super().close()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/http/client.py", line 961, in close
+    sock.close()   # close it manually... there may be other refs
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/socket.py", line 502, in close
+    self._real_close()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/ssl.py", line 1366, in _real_close
+    super()._real_close()
+KeyboardInterrupt: 
+

arxiv/0-5-tokenized/index.json

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arxiv/1-0/shard.00006.mds

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arxiv/1-0/shard.00008.mds

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arxiv/1-1/index.json

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19091629, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00024.mds", "bytes": 67015876, "hashes": {}}, "samples": 1167, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00024.mds.zstd", "bytes": 19125968, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00025.mds", "bytes": 67071491, "hashes": {}}, "samples": 1095, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00025.mds.zstd", "bytes": 18642474, "hashes": {}}}, {"column_encodings": ["str", "str"], "column_names": ["domain", "text"], "column_sizes": [null, null], "compression": "zstd", "format": "mds", "hashes": [], "raw_data": {"basename": "shard.00026.mds", "bytes": 13583820, "hashes": {}}, "samples": 227, "size_limit": 67108864, "version": 2, "zip_data": {"basename": "shard.00026.mds.zstd", "bytes": 3869695, "hashes": {}}}], "version": 2}

arxiv/1-1/tokenize_output.log

@@ -0,0 +1,68 @@
+Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes).
+Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained.
+Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/1-1...
+Using tokenizer model bclavie/olmo_bert_template...
+Using 1 processes for tokenization, with 1000 items per process.
+
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 81, in sample_dataset_from_config
+    results = pool.map(process_func, chunks)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 367, in map
+    return self._map_async(func, iterable, mapstar, chunksize).get()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 768, in get
+    self.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 765, in wait
+    self._event.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 607, in wait
+    signaled = self._cond.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 320, in wait
+    waiter.acquire()
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 64, in sample_dataset_from_config
+    with mp.Pool(num_processes) as pool:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 739, in __exit__
+    self.terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 657, in terminate
+    self._terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 224, in __call__
+    res = self._callback(*self._args, **self._kwargs)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 732, in _terminate_pool
+    p.join()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join
+    res = self._popen.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait
+    return self.poll(os.WNOHANG if timeout == 0.0 else 0)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll
+    pid, sts = os.waitpid(self.pid, flag)
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 108, in <module>
+    sample_dataset_from_config(args)
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config
+    with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__
+    self.finish()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish
+    self.flush_shard()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard
+    raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename,
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 222, in _process_file
+    out.write(data)
+KeyboardInterrupt
+Exception ignored in atexit callback: <function _exit_function at 0x7f453b4db6d0>
+Traceback (most recent call last):
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function
+    p.join()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join
+    res = self._popen.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait
+    return self.poll(os.WNOHANG if timeout == 0.0 else 0)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll
+    pid, sts = os.waitpid(self.pid, flag)
+KeyboardInterrupt: 

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arxiv/2-4/tokenize_output.log

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+Because `predownload` was not specified, it will default to 8*batch_size if batch_size is not None, otherwise 64. Prior to Streaming v0.7.0, `predownload` defaulted to max(batch_size, 256 * batch_size // num_canonical_nodes).
+Special tokens have been added in the vocabulary, make sure the associated word embeddings are fine-tuned or trained.
+Using local dataset /home/oweller/bert24-data/data/ProLong_text/arxiv/2-4...
+Using tokenizer model bclavie/olmo_bert_template...
+Using 1 processes for tokenization, with 1000 items per process.
+
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 81, in sample_dataset_from_config
+    results = pool.map(process_func, chunks)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 367, in map
+    return self._map_async(func, iterable, mapstar, chunksize).get()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 768, in get
+    self.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 765, in wait
+    self._event.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 607, in wait
+    signaled = self._cond.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/threading.py", line 320, in wait
+    waiter.acquire()
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 64, in sample_dataset_from_config
+    with mp.Pool(num_processes) as pool:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 739, in __exit__
+    self.terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 657, in terminate
+    self._terminate()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 224, in __call__
+    res = self._callback(*self._args, **self._kwargs)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/pool.py", line 732, in _terminate_pool
+    p.join()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join
+    res = self._popen.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait
+    return self.poll(os.WNOHANG if timeout == 0.0 else 0)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll
+    pid, sts = os.waitpid(self.pid, flag)
+KeyboardInterrupt
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 108, in <module>
+    sample_dataset_from_config(args)
+  File "/home/oweller/bert24-data/src/bert24_data/tokenization/tokenize_mds.py", line 63, in sample_dataset_from_config
+    with MDSWriter(out=output_dir, columns=MDS_COLS_PRE_TOKENIZED, compression='zstd') as mds_writer:
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 354, in __exit__
+    self.finish()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 298, in finish
+    self.flush_shard()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 429, in flush_shard
+    raw_data_info, zip_data_info = self._process_file(raw_data, raw_data_basename,
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/site-packages/streaming/base/format/base/writer.py", line 222, in _process_file
+    out.write(data)
+KeyboardInterrupt
+Exception ignored in atexit callback: <function _exit_function at 0x7f22b40e76d0>
+Traceback (most recent call last):
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/util.py", line 357, in _exit_function
+    p.join()
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/process.py", line 149, in join
+    res = self._popen.wait(timeout)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 43, in wait
+    return self.poll(os.WNOHANG if timeout == 0.0 else 0)
+  File "/home/oweller/miniconda3/envs/bert24/lib/python3.10/multiprocessing/popen_fork.py", line 27, in poll
+    pid, sts = os.waitpid(self.pid, flag)
+KeyboardInterrupt: 

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