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1
fogunsan commited on
Commit
31b2244
·
1 Parent(s): e1d35dd

update configs, add readmes and add new axiom optics data, remove duplicate axiom optics data

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. 2025_02_19_Resonon/README.md +2 -0
  2. 2025_02_19_Resonon/config.json +2 -1
  3. 2025_02_25_Resonon/README.md +2 -0
  4. 2025_02_28_Axiom/README.md +2 -0
  5. 2025_02_28_Axiom/config.json +2 -1
  6. 2025_02_28_Axiom_old/ins_001_type_zoom_100_blood_003_channels.tiff +0 -3
  7. 2025_02_28_Axiom_old/ins_001_type_zoom_100_blood_004_channels.tiff +0 -3
  8. 2025_02_28_Axiom_old/ins_001_type_zoom_100_blood_004_raw.tiff +0 -3
  9. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_001.txt +0 -25
  10. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_001_channels.tiff +0 -3
  11. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_001_raw.tiff +0 -3
  12. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002.txt +0 -25
  13. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002_channels.tiff +0 -3
  14. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002_raw.tiff +0 -3
  15. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003.txt +0 -25
  16. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003_channels.tiff +0 -3
  17. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003_raw.tiff +0 -3
  18. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_004.txt +0 -25
  19. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_004_channels.tiff +0 -3
  20. 2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_004_raw.tiff +0 -3
  21. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_001_channels.tiff +0 -3
  22. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_001_raw.tiff +0 -3
  23. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_002.txt +0 -25
  24. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_002_channels.tiff +0 -3
  25. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_002_raw.tiff +0 -3
  26. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_003.txt +0 -25
  27. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_003_channels.tiff +0 -3
  28. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_003_raw.tiff +0 -3
  29. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_004.txt +0 -25
  30. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_004_channels.tiff +0 -3
  31. 2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_004_raw.tiff +0 -3
  32. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_001_channels.tiff +0 -3
  33. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_001_raw.tiff +0 -3
  34. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_002_channels.tiff +0 -3
  35. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_002_raw.tiff +0 -3
  36. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_003.txt +0 -25
  37. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_003_channels.tiff +0 -3
  38. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_003_raw.tiff +0 -3
  39. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_004.txt +0 -25
  40. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_004_channels.tiff +0 -3
  41. 2025_02_28_Axiom_old/ins_001_type_zoom_50_clean_004_raw.tiff +0 -3
  42. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_001.txt +0 -25
  43. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_001_channels.tiff +0 -3
  44. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_001_raw.tiff +0 -3
  45. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_002.txt +0 -25
  46. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_002_channels.tiff +0 -3
  47. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_002_raw.tiff +0 -3
  48. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_003.txt +0 -25
  49. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_003_channels.tiff +0 -3
  50. 2025_02_28_Axiom_old/ins_001_type_zoom_75_blood_003_raw.tiff +0 -3
2025_02_19_Resonon/README.md ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ Resonon halogen light line was used for lightning.
2
+ Background was the black stage provided with Resonon Benchtop system.
2025_02_19_Resonon/config.json CHANGED
@@ -4,5 +4,6 @@
4
  "brand": "Resonon",
5
  "spectral_range": [400,1000],
6
  "classes": ["clean", "blood"],
7
- "num_channels": 300
 
8
  }
 
4
  "brand": "Resonon",
5
  "spectral_range": [400,1000],
6
  "classes": ["clean", "blood"],
7
+ "num_channels": 300,
8
+ "distance": {50:"19in", 75:"24in", 100:"29in"}
9
  }
2025_02_25_Resonon/README.md ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ Resonon halogen light line was used for lightning.
2
+ Background was the black stage provided with Resonon Benchtop system.
2025_02_28_Axiom/README.md ADDED
@@ -0,0 +1,2 @@
 
 
 
1
+ Halogen lightning rig (both bulbs) were used for lightning.
2
+ Background was a white table.
2025_02_28_Axiom/config.json CHANGED
@@ -4,5 +4,6 @@
4
  "brand": "Axiom Optics",
5
  "spectral_range": [1100,1600],
6
  "classes": ["clean", "blood"],
7
- "num_channels": 9
 
8
  }
 
4
  "brand": "Axiom Optics",
5
  "spectral_range": [1100,1600],
6
  "classes": ["clean", "blood"],
7
+ "num_channels": 9,
8
+ "distance": {50:"19in", 75:"24in", 100:"29in"}
9
  }
2025_02_28_Axiom_old/ins_001_type_zoom_100_blood_003_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_blood_004_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_001.txt DELETED
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- Version : 3.5.5
2
- Image description
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-
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- Exposure : 8.50 ms
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- Black Level : 0.00
6
- Frame Rate : 58.00 FPS
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-
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- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
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- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
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- Size channel : 432 x 344
14
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- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
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-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00006 | 2025.02.28_12:12:32.130 | ins_001_type_zoom_100_clean_001
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_001_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002.txt DELETED
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1
- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.50 ms
5
- Black Level : 0.00
6
- Frame Rate : 58.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
11
- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
- Size image raw : 1296 x 1032
13
- Size channel : 432 x 344
14
- Coefficients channel normalizer : 1.02882 1.0359 1.30425 1.13481 1.24927 1.27983 1.08034 1 1.05146
15
- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00007 | 2025.02.28_12:12:40.261 | ins_001_type_zoom_100_clean_002
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_002_raw.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003.txt DELETED
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1
- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.50 ms
5
- Black Level : 0.00
6
- Frame Rate : 58.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
11
- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
- Size image raw : 1296 x 1032
13
- Size channel : 432 x 344
14
- Coefficients channel normalizer : 1.02882 1.0359 1.30425 1.13481 1.24927 1.27983 1.08034 1 1.05146
15
- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00008 | 2025.02.28_12:12:49.198 | ins_001_type_zoom_100_clean_003
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003_channels.tiff DELETED

Git LFS Details

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_003_raw.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_004.txt DELETED
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1
- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.50 ms
5
- Black Level : 0.00
6
- Frame Rate : 58.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
11
- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
- Size image raw : 1296 x 1032
13
- Size channel : 432 x 344
14
- Coefficients channel normalizer : 1.02882 1.0359 1.30425 1.13481 1.24927 1.27983 1.08034 1 1.05146
15
- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00009 | 2025.02.28_12:12:58.139 | ins_001_type_zoom_100_clean_004
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_100_clean_004_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_002.txt DELETED
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1
- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.33 ms
5
- Black Level : 0.00
6
- Frame Rate : 60.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
11
- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
- Size image raw : 1296 x 1032
13
- Size channel : 432 x 344
14
- Coefficients channel normalizer : 22.4404 1.20026 1.16456 1.23941 1 1.37571 1.32997 1.54642 1.19652
15
- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00061 | 2025.02.28_13:58:05.386 | ins_001_type_zoom_50_blood_002
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_002_channels.tiff DELETED

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2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_003.txt DELETED
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1
- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.33 ms
5
- Black Level : 0.00
6
- Frame Rate : 60.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
11
- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
- Size image raw : 1296 x 1032
13
- Size channel : 432 x 344
14
- Coefficients channel normalizer : 22.4404 1.20026 1.16456 1.23941 1 1.37571 1.32997 1.54642 1.19652
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- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00062 | 2025.02.28_13:58:14.776 | ins_001_type_zoom_50_blood_003
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_004.txt DELETED
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- Version : 3.5.5
2
- Image description
3
-
4
- Exposure : 8.33 ms
5
- Black Level : 0.00
6
- Frame Rate : 60.00 FPS
7
-
8
- Model : PRO-CMS-97888-C001
9
- Camera SN : CMS24100413
10
- FWHM (nm) : 23 21 20 20 21 23 25 29 33
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- Filter's centering (nm) : 1070 1129 1188 1250 1311 1376 1436 1496 1553
12
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- Crosstalk correction : True
16
- Coefficients white balance : 1 1 1
17
-
18
- Output :
19
- Raw tiff full depth
20
- Channel tiff 9 full depth
21
-
22
-
23
- Image :
24
- Index | Date | Name
25
- 00063 | 2025.02.28_13:58:26.105 | ins_001_type_zoom_50_blood_004
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
2025_02_28_Axiom_old/ins_001_type_zoom_50_blood_004_channels.tiff DELETED

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Git LFS Details

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- Index | Date | Name
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- 00003 | 2025.02.28_14:29:07.679 | ins_001_type_zoom_50_clean_003
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Git LFS Details

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Git LFS Details

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- Index | Date | Name
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- 00004 | 2025.02.28_14:29:17.541 | ins_001_type_zoom_50_clean_004
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Git LFS Details

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Git LFS Details

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- Index | Date | Name
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- 00037 | 2025.02.28_13:45:38.946 | ins_001_type_zoom_75_blood_001
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Git LFS Details

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- Image :
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- Index | Date | Name
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- 00038 | 2025.02.28_13:45:48.456 | ins_001_type_zoom_75_blood_002
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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Git LFS Details

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- Image :
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- Index | Date | Name
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- 00039 | 2025.02.28_13:45:54.488 | ins_001_type_zoom_75_blood_003
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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